Fractional assignment of paternity and sibships

• Quickstart guide to FAPS
• Introduction
  • Background
  • Prerequisites
  • Marker data types
  • Literature cited
• Genotype data in FAPS
  • genotypeArray objects
  • Importing genotype data
  • Multiple families
• Paternity arrays
  • Creating a paternityArray from genotype data
  • paternityArray structure
  • Importing a paternityArray
• Sibship clustering
  • Generating a sibshipCluster object
  • Sibling relationships
  • Inferring family structure
  • Identifying fathers
• Inference about mating patterns
• Simulating data and power analysis
  • Simulation building blocks
  • Automation
  • Custom simulations
• Dealing with multiple half-sib families
  • Divide genotype data into families
  • paternityArray objects with multiple families
  • Clustering multiple families
  • Paternity for many arrays
• Data cleaning for Antirrhinum majus data set from 2012
  • Data inspection
  • Example family: L1872
  • Multiple families